IV. Phase 3 – Stabilisation and prevention (days 61–90)

IV. 7 Special groups: older adults, immunosuppressed, IBD, pregnancy

The principles of the DiffBiome course apply to everyone, but a few life situations call for special caution. In the next three days we review what to watch out for if you are older, if your immune system is weak, if you have inflammatory bowel disease, or if you are expecting a baby – and why it is worth keeping closer contact with your doctor in such cases.

Summary

The basic rules of recurrent Clostridioides difficile[G] infection and the DiffBiome course hold equally for everyone: the correct classification, accurate capsule-taking, fluid replacement and lifestyle-building. A few life situations, however, call for your doctor to be even more careful, and to ask you and see you more often. These include older age with several concurrent conditions, a weakened immune system, inflammatory bowel disease (IBD[G]), and pregnancy and breastfeeding. None of these automatically rules out treatment – but in each, "more slowly, with closer supervision" is the wise approach. This chapter helps you recognise if you too belong to one of these groups, and tells you what it means in practice.

Older age: more underlying conditions, a more cautious pace

If you are older, your recovery is just as realistic a goal as anyone else's – indeed, recurrent infection more often strikes the older age group, so the DiffBiome course can be especially helpful. The difference lies rather in the fact that in older age there are more often several conditions at once (heart, kidney, diabetes), and you often take several medications. This is not an obstacle, but a reason for your doctor to review the whole picture more thoroughly: which of your medications fits how with the course, and where caution is needed.

In practice this means that dehydration must be watched even more closely – in an older body, fluid deficit causes dizziness, weakness and confusion sooner [159]. Keep fluids at hand, drink regularly, and do not wait until you are thirsty. If you live alone, arrange with a relative to check on you daily during the course.

Two further considerations are particularly important in older age. The first is age-related fitness. Illness and bed rest accelerate muscle loss (sarcopenia) [158], which increases the risk of falls and fractures. That is precisely why exercise in older age is not about performance, but about preserving muscle strength and balance: a regular, safe daily walk, simple sit-to-stand exercises from a stable chair, and – if your doctor approves – light balance and resistance exercises. These should be accompanied by enough protein in the diet, because protein is the building material of muscle, and in older age it easily falls short. The goal is simple: to come out of the course not only symptom-free, but also strong and steady on your feet. In your home environment it is worth reducing fall hazards as well: good lighting, removing slippery rugs, a handrail in the bathroom.

The second is medication review. In older age polypharmacy is common – many medications taken in parallel – and among these there may be some that affect CDI risk or symptoms (for example acid-suppressing PPIs[G] or motility-slowing agents). It is worth going through the full medication list thoroughly with your doctor once: which agent is still genuinely needed, and which can be safely dropped. This is not an independent decision, but a joint, conscious review – dropping every unnecessary agent is one more layer of protection for your flora.

A weakened immune system: heightened monitoring

If your immune system is for some reason weaker – for example because of post-transplant medications, chemotherapy, biological treatment or an underlying condition – the DiffBiome course can still be considered, but with closer medical monitoring. The reason for this is simple: a weaker immune system is less able to keep in check even those few bacteria that would cause no problem at all in a healthy body.

This does not mean that the course is dangerous for you – that is precisely why donor screening is extremely strict. Rather, it means that your doctor will check on you more often, watch more closely for fever and your general wellbeing, and act immediately at any unusual symptom. Your job at such times is not to play down any symptom, and to report every unusual sign – even if it seems mild.

IBD and pregnancy: limited data, a joint decision

If you have inflammatory bowel disease (Crohn's disease or ulcerative colitis), especially during an active flare, treatment may be started only with particular caution and under the guidance of your treating physician – the inflamed gut may react differently, and the symptoms are harder to separate. The situation is similar with pregnancy and breastfeeding: for these life situations limited data are available at present, so the decision should always be made together with your doctor, with an honest weighing of the expected benefits and the uncertainties. If any of these situations applies to you, do not treat this book as the decision-maker – the book helps you frame your questions, but you find the answer together with your doctor.

🩺 Clinical block

The DiffBiome datasheet (DiffBiome Service Datasheet, MicroBiome Bank) provides guidance for several special groups. In immunodeficient or immunosuppressed patients, heightened monitoring is justified (Kelly 2014 [100]); in pregnancy and during breastfeeding the data are limited, so use requires individual medical judgement. In older patients, caution is recommended because of comorbidities[G] and polypharmacy; for the under-18 age group the datasheet indicates no known contraindication, but specialist supervision is mandatory in every case.

States calling for absolute caution according to the datasheet: toxic megacolon[G], fulminant colitis[G], and suspected bloodstream infection – these require thorough investigation before any FMT preparation is considered (Carlson 2022 [058]; Cammarota 2017 [016]). Donor screening – blood and stool testing performed no more than 4 weeks before donation and, if the donor’s health is unchanged, repeated at most every 8 weeks, together with a multiplex PCR pathogen panel and MDRO screening – is precisely what minimises the risk to immunosuppressed recipients, but it does not replace clinical vigilance (European FMT consensus: Cammarota 2017 [016]; stool banking consensus: Cammarota 2019 [735]).

In inflammatory bowel disease the donor-side lessons are also relevant: in DSQ scoring, structural/inflammatory bowel disease (IBD, coeliac disease, microscopic colitis) is an absolute exclusion criterion for the donor (Donor SOP 003 v2.5). On the recipient side, during an active IBD flare the separation of symptoms and the assessment of treatment response are more difficult, so the SIS classification and the diary trend must be interpreted with particular care (Clinical protocol guide v7.1, 2026-08-09).

Day 79 – Take stock of your own situation

Today look honestly at yourself: do you belong to any of the special groups? If so, this is not bad news – it just means it is worth asking your doctor for an extra conversation.

  • Think it over and write it down: older age with several medications, a weakened immune system, IBD, pregnancy/breastfeeding – does any apply?;
  • If so, make a list of your questions for the next medical consultation;
  • In older age: pay attention to your fitness – a daily walk, a simple sit-to-stand exercise, and enough protein to preserve muscle;
  • Fluid replacement consciously: drink regularly, not only when thirsty;
  • Diary: stool count, Bristol, wellbeing, and write down if you notice any unusual symptom.
Day 80 – Reviewing medications and interactions

Today focus on your medications: in older age and as an immunosuppressed person this is especially important.

  • Make a complete list of all the medications and dietary supplements you take;
  • In older age/polypharmacy: ask the doctor to review the full medication list – whether each agent (e.g. PPI, motility inhibitor) is still needed;
  • Remember: during the course, drop probiotics, unless your doctor says otherwise;
  • If an antibiotic also comes up, always discuss the 48-hour rule with your doctor;
  • Diary: the usual fields + the medication list in the notes column.
Day 81 – Talk it over with a relative

Today involve someone from your circle: a trusted relative or friend can help a great deal with monitoring, especially if you belong to one of the special groups.

  • Tell a close person which warning signs call for immediate help;
  • Agree on a simple daily "how are you?" signal, especially if you live alone;
  • Fluids and rest according to the usual routine;
  • Diary: the trend of the 3 days in one place, and any symptom worth noting.

🍽️ Eating during these days

On the eating side, the theme of special groups also means a more cautious pace: the basic principle is the same – a varied, fibre-rich diet that feeds the engrafted flora – but the emphasis is on safety. In older age, fluid replacement and enough protein (to preserve muscle strength) are especially important; with a weakened immune system, IBD or pregnancy, it is worth introducing every new source cautiously, in small portions, and adjusting according to tolerance. The concrete eating task for the three days: drink regularly (not only when thirsty), pay attention to protein, and each day include the plant of the day in at least one meal, prepared gently.

For these days (79–81), the Plant Calendar (Appendix F) brings the sources dates (79), fresh figs (80) and poppy seeds (81). Dates and figs are fibre-rich, naturally sweet sources, and poppy seeds provide calcium and fibre. In the second half of the programme (roughly days 61–90), the goal is to sustain full plant diversity[G] and fermentable fibre sources: varied fibre is food for the useful bacteria, from which short-chain fatty acids[G] (including butyrate[G]) form, and these in turn support the gut barrier and diversity. A diverse, stable flora is the basis of resilience – and this is useful for every age group and in every situation. If you do not tolerate one of the sources, or it causes bloating, leave it out and return to it later – for the special groups, this "more slowly, watching" principle applies to eating as well.

📊 Data

During these days, alongside the usual fields, pay special attention to:

  • DiffBiome dose (capsules/day) and LOT number;
  • daily stool count;
  • stool Bristol scale[G] (1–7);
  • bloody stool (yes/no);
  • fever (yes/no, if yes: temperature);
  • fluid intake (litres);
  • wellbeing (1–5);
  • notes column: medications taken, unusual symptoms;
  • Movement: type + minutes, step count (target/actual);
  • Stress level (1–5) and mood (1–5);
  • Sleep (hours + quality 1–5).

Why does this matter?

The special groups are not "exceptions" to recovery – it is precisely in their case that DiffBiome can bring the most benefit, since recurrent infection often hits them hardest. The key is that in these situations treatment is always a joint decision, with closer supervision: you report your symptoms honestly, and your doctor, seeing the whole picture, tailors the course to you. It is this partnership that makes the journey safe.

References

[016] Cammarota G, Ianiro G, Tilg H et al. European consensus conference on faecal microbiota transplantation in clinical practice. Gut. 2017. Link

European consensus conference developing evidence-based recommendations on FMT for clinical practice, with 28 experts from 10 countries collaborating in working groups. Statements were generated through evidence-based review, evaluated electronically via a Delphi process, and finalized in a plenary consensus session. Recommendations cover FMT indications, donor selection, faecal material preparation, clinical management, faecal delivery, and minimum requirements for establishing an FMT centre. Provides the European standardization framework for safe and governed FMT delivery.

[058] Carlson TJ, Gonzales-Luna AJ, Garey KW. Fulminant Clostridioides difficile Infection: A Review of Treatment Options for a Life-Threatening Infection. Semin Respir Crit Care Med. 2022. Link

A review of the treatment options for fulminant Clostridioides difficile infection. The authors put the fulminant form at 3–5% of all CDI cases and its associated mortality at 30–40% — an order of magnitude above CDI mortality at population level. The review works through the pharmacological and surgical options for managing the fulminant case. In this document the item supplies the mortality figure for the terminal station of Section II. 1.; its denominator is all fulminant cases, not only the patients who proceed to surgery.

[100] Kelly CR, Ihunnah C, Fischer M, Khoruts A, Surawicz C, Afzali A, Aroniadis O, Barto A, Borody T, Giovanelli A, Gordon S, Gluck M, Hohmann EL, Kao D, Kao JY, McQuillen DP, Mellow M, Rank KM, Rao K, Ray A, Schwartz MA, Singh N, Stollman N, Suskind DL, Vindigni SM, Youngster I, Brandt L. **. American Journal of Gastroenterology. 2014. Link

Clostridium difficile infection (CDI) is especially dangerous in immunocompromised patients, yet the safety of fecal microbiota transplantation (FMT) in this group had been uncertain. This 16-centre retrospective series studied 80 immunocompromised patients (75 adults, 5 children) whose CDI was recurrent (55%), refractory (11%) or severe/overlapping (34%); causes of immunocompromise included HIV/AIDS, solid-organ transplant, oncologic disease, inflammatory bowel disease immunosuppression and other conditions. The CDI cure rate after a single FMT was 78%, and the procedure was generally safe: serious adverse events within 12 weeks were uncommon and did not indicate FMT-transmitted infection. The authors conclude that FMT is an effective and safe option for CDI even in immunocompromised patients.

[158] Cruz-Jentoft AlfonsoJ, Bahat Gülistan, Bauer Jürgen, Boirie Yves, Bruyère Olivier, Cederholm Tommy, Cooper Cyrus, Landi Francesco, Rolland Yves, Sayer AvanAihie, Schneider StéphaneM, Sieber CornelC, Topinková Eva, Vandewoude Maurits, Visser Marjolein, Zamboni Mauro. **. Age and Ageing. 2019. Link

In 2010 the European Working Group on Sarcopenia in Older People (EWGSOP) issued a definition of sarcopenia; in 2018 the group reconvened (EWGSOP2) to update it in light of a decade of new evidence, and this paper presents the revised consensus. EWGSOP2 reframes sarcopenia as a progressive muscle disease (muscle failure) and now places low muscle strength at the centre of the diagnosis, using low muscle quantity or quality to confirm it and poor physical performance to indicate severe sarcopenia. The paper provides an updated case-finding, diagnosis and severity algorithm together with clear cut-off points for the measured variables. The authors call on clinicians to detect and treat sarcopenia early to prevent adverse outcomes that burden patients and health systems.

[159] Volkert D, Beck AM, Cederholm T, Cruz-Jentoft A, Goisser S, Hooper L, Kiesswetter E, Maggio M, Raynaud-Simon A, Sieber CC, Sobotka L, van Asselt D, Wirth R, Bischoff SC. **. Clinical Nutrition. 2019. Link

Malnutrition and dehydration are widespread among older people, while obesity is a growing problem. This ESPEN guideline provides evidence-based recommendations for clinical nutrition and hydration in older persons in order to prevent and treat malnutrition and dehydration. It also addresses whether — and when — weight-reducing interventions are appropriate in overweight or obese older adults. The practical message is to screen nutritional and hydration status routinely and to apply individualised interventions aimed at preserving function, mobility and quality of life.

[735] Cammarota G, Ianiro G, Kelly CR et al. International consensus conference on stool banking for faecal microbiota transplantation in clinical practice. Gut. 2019. Link

This international consensus from FMT experts in Europe, North America and Australia provides statements on stool banking for FMT, covering general principles, organization, donor selection and screening, stool collection/preparation/storage, services and clients, registries, outcome monitoring, ethics and FMT's evolving clinical role. Consensus was achieved through Delphi rounds plus plenary discussion, with statements supported by best available evidence. The document guides global stool-bank development to promote safe, equitable FMT access for recurrent C. difficile infection.

Authors:
PG
Dr. Patay Gábor
physician, microbiota specialist
BA
Dr. Bezzegh Attila
medical director, clinical microbiologist
AM
Dra. Anna Munar
physician, exposome specialist
MicroBiome Bank — medically reviewed professional content. Last updated: 2026.